Unverified Commit 3f3ad9e2 authored by Ryoko Noda's avatar Ryoko Noda Committed by GitHub
Browse files

Add details of preprocess-ephys-files-mod

Added information about preprocess-ephys-files-mod.ipynb to README.
parent 06f6120d
......@@ -12,6 +12,7 @@ The dataset in this repo is from the [original work](https://github.com/berensla
1. Run ```allen-data-preprocess-mod.ipynb``` to preprocess the Allen Institute data. This notebook contains instructions on additional files you will need.
2. Run ```patch-seq-data-load.ipynb``` to load all the data and package together into a Python object.
3. Run ```ttype-assignment.ipynb``` to assign all cells to the t-types. This also creates a lot of image files.
4. Run ```preprocess-ephys-files-mod.ipynb``` to extract the electrophysiological features and create ```three_traces.pickle```. This notebook contains instructions on additional files you will need.
## About the dataset and the code
......@@ -21,3 +22,4 @@ The entire dataset and codes listed below (some with slight modifications) are b
* ```rnaseqTools.py```
* ```patch-seq-data-load.ipynb```
* ```ttype-assignment.ipynb```
* ```preprocess-ephys-files-mod.ipynb``` (this one is also modified from original)
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment